Generate the igraph for a Network Adjacency Matrix

Given the adjacency matrix of an undirected graph, returns the corresponding igraph containing the list of nodes and edges.

generateNetworkFromAdjacencyMat() is a deprecated equivalent of generateNetworkGraph().

Usage

generateNetworkGraph(
  adjacency_matrix
)

# Deprecated equivalent:
generateNetworkFromAdjacencyMat(
  adjacency_matrix
)

Arguments

adjacency_matrix

A symmetric matrix. Passed to graph_from_adjacency_matrix().

Value

An object of class igraph, containing the list of nodes and edges corresponding to adjacency_matrix.

References

Hai Yang, Jason Cham, Brian Neal, Zenghua Fan, Tao He and Li Zhang. (2023). NAIR: Network Analysis of Immune Repertoire. Frontiers in Immunology, vol. 14. doi: 10.3389/fimmu.2023.1181825

Webpage for the NAIR package

Author

Brian Neal (Brian.Neal@ucsf.edu)

Examples

set.seed(42)
toy_data <- simulateToyData(sample_size = 10)

adj_mat <-
  generateAdjacencyMatrix(
    toy_data$CloneSeq
  )

igraph <-
  generateNetworkGraph(
    adj_mat
  )